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Vicente Ernesto Acuña Aguayo

Scientist researcher

UNIVERSIDAD DE CHILE

Santiago, Chile

Líneas de Investigación


graph algorithms, enumeration, biological networks, biological sequences, bioinformatics, directed hypergraphs

Educación

  •  Bioinformatics, Université de Lyon. Francia, 2010
  •  Computer Science, Universidad de Chile. Chile, 2004
  •  Ingeniero Civil Matemático, Universidad de Chile. Chile, 2002

Experiencia Académica

  •   Postdoctoral position Full Time

    Université de Lyon

    Lyon, Francia

    2010 - 2011

  •   Postdoctoral position Full Time

    Universidad de Chile

    FCFM

    Santiago, Chile

    2012 - 2013

  •   Scientist researcher Full Time

    Universidad de Chile

    FCFM

    Santiago, Chile

    2013 - At present

Experiencia Profesional

  •   Research engineer Full Time

    CMM, Universidad de Chile

    Santiago, Chile

    2004 - 2005

Formación de Capital Humano


Tutor of Benjamín Ruiz, course of Introduction to Mathematical Modelling (July-December 2014). Center for Mathematical Modeling and Escuela de Ingeniería (Universidad De Chile).

Teaching graduate and postgraduate course "Modeling and Analysis of Biological Networks" (March-July 2014). Doctoral School of Complex Systems (Universidad Adolfo Ibañez) and Escuela de Ingeniería (Universidad De Chile). Jointly with Alejandro Maass and Eric Goles.

Teaching regular course of Probability and Statistics (March-July 2014). Escuela de Ingeniería (Universidad de Chile).

Organization of regular seminar MOAI-Bio (2013-2014). Center for Mathematical Modeling (Universidad de Chile).

Organization of mini course BioASP (2013-2014). Main exposer Santiago Videla. Center for Mathematical Modeling (Universidad de Chile).



 

Article (9)

On Bubble Generators in Directed Graphs
Deciphering transcriptional regulations coordinating the response to environmental changes
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure
Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets
A note on the complexity of finding and enumerating elementary modes
Graph-based analysis of the metabolic exchanges between two co-resident intracellular symbionts, Baumannia cicadellinicola and Sulcia muelleri, with their insect host, Homalodisca coagulata
Modes and cuts in metabolic networks: Complexity and algorithms
Coding with variable block maps

BookSection (4)

Modeling parsimonious putative regulatory networks: complexity and heuristic approach
Enumerating chemical organisations in consistent metabolic networks: Complexity and algorithms
The biclique k-clustering problem in bipartite graphs and its application in bioinformatics
Enumerating precursor sets of target metabolites in a metabolic network

ConferencePaper (1)

Minimum ratio cover of matrix columns by extreme rays of its induced cone
15
Vicente Acuña

Scientist researcher

UNIVERSIDAD DE CHILE

Santiago, Chile

2
Alejandro Maass

Main Researcher

Center for Mathematical Modeling

Universidad de Chile

Santiago, Chile

1
Eduardo Moreno

Full Professor

Faculty of Engineering and Sciences

Universidad Adolfo Ibañez

Peñalolen, Chile