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Juan Pablo Cardenas Astudillo

Assistant Professor

Universidad Mayor de Chile

Santiago, Chile

Líneas de Investigación


* Genómica comparativa y Filogenómica de organismos de la microbiota intestinal * Análisis de la composición, diversidad y función del microbioma intestinal humano con potenciales aplicaciones en enfermedades metabólicas

Educación

  •  Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2008
  •  Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2008
  •  Biotechnology, Universidad Andres Bello. Chile, 2015

Experiencia Académica

  •   Phd candidate Full Time

    Fundacion Ciencia y Vida (FCV)

    Santiago, Chile

    Enero 2011 - Enero 2015

  •   Research Assistant Full Time

    Fundacion Ciencia y Vida (FCV)

    Santiago, Chile

    Enero 2008 - Enero 2010

  •   Assistant Professor Full Time

    Universidad Mayor

    Biology

    Santiago, Chile

    Enero 2019 - A la fecha

Experiencia Profesional

  •   Senior Bioinformatician Full Time

    uBiome

    Santiago, Chile

    Enero 2016 - Enero 2019

  •   Research assistant (INNOVA project 08CM01-03) Full Time

    Fundacion Ciencia y Vida

    Santiago, Chile

    Enero 2008 - Enero 2010

Premios y Distinciones

  •   Beca de Estudios de Doctorado en Chile

    COMISION NACIONAL DE INVESTIGACION CIENTIFICA Y TECNOLOGICA

    Chile, 2010

    Beca para estudios de doctorado en Chile.


 

Article (21)

A novel sequencing-based vaginal health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis
Self-Sampling for Human Papillomavirus Testing: Increased Cervical Cancer Screening Participation and Incorporation in International Screening Programs
16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome
Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile
Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366)
Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon
Aerobic Lineage of the Oxidative Stress Response Protein Rubrerythrin Emerged in an Ancient Microaerobic, (Hyper)Thermophilic Environment
Genomic and metagenomic challenges and opportunities for bioleaching: a mini-review
SinEx DB: a database for single exon coding sequences in mammalian genomes
Reclassification of 'Thiobacillus prosperus' Huber and Stetter 1989 as Acidihalobacter prosperus gen. nov., sp nov., a member of the family Ectothiorhodospiraceae
Draft genome sequence of the iron-oxidizing acidophile Leptospirillum ferriphilum type strain DSM 14647
Draft Genome Sequence of the Iron-Oxidizing, Acidophilic, and Halotolerant "Thiobacillus prosperus" Type Strain DSM 5130
Draft genome sequence of the nominated type strain of "Ferrovum myxofaciens,"" an acidophilic, iron-oxidizing betaproteobacterium"
Genetic variability of psychrotolerant Acidithiobacillus ferrivorans revealed by (meta)genomic analysis
Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation
Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus
Comparative genomics of the oxidative stress response in bioleaching microorganisms
Thiol/Disulfide System Plays a Crucial Role in Redox Protection in the Acidophilic Iron-Oxidizing Bacterium Leptospirillum ferriphilum
Comparative genomics begins to unravel the ecophysiology of bioleaching
Genes and pathways for CO2 fixation in the obligate, chemolithoautotrophic acidophile, Acidithiobacillus ferrooxidans, Carbon fixation in A. ferrooxidans
Microarray and bioinformatic analyses suggest models for carbon metabolism in the autotroph Acidithiobacillus ferrooxidans

ConferencePaper (3)

Comparative study of redox stress response in the acidophilic bacteria Leptospirillum ferriphilum and Acidithiobacillus ferrooxidans
Predicted CO/CO(2) fixation in Ferroplasma spp. via a novel chimaeric pathway
Prediction of FNR regulated genes and metabolic pathways potentially involved in anaerobic growth of Acidithiobacillus ferrooxidans

Proyecto (2)

“Desarrollo de Arreglos de ADN Especializados para el monitoreo de Transcriptomas Industriales de Biolixiviación”
ESTRATEGIAS BIOINFORMATICAS Y DE GENOMICA FUNCIONAL EN LA COMPRENSION DE LA INUSUAL FISIOLOGIA DE LA BACTERIANA ACIDITHIOBACILLUS FERROOXIDANS.

Review (1)

Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms

Patent (1)

Method and system for panel characterizations

Article (1)

Predicted CO/CO2 fixation in Ferroplasma spp. via a novel chimaeric pathway

BookSection (1)

Chapter 11: Progress in Acidophile Genomics
27
Juan Cardenas

Assistant Professor

Universidad Mayor de Chile

Santiago, Chile

14
Raquel Quatrini

Research Associate

Fundación Ciencia & Vida

Santiago, Chile

12
David Holmes

Director

Center for Bioinformatics and Genome Biology

FUNDACION CIENCIA PARA LA VIDA Y UNIVERSIDAD ANDRES BELLO (UNAB)

Santiago, Chile

5
Jorge Valdes

DIRECTOR

CENTRO DE GENOMICA Y BIOINFORMATICA

UNIVERSIDAD MAYOR

Santiago, Chile

3
Harold Nuñez

PostDoc

FUNDACIÓN CIENCIA PARA LA VIDA

Santiago, Chile

2
Gloria Levicán

Académica Profesora Asociada

Departamento de Biología

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

1
Hector Osorio

Postdoctorado

Departamento Genética Molecular y Microbiología

Pontificia Universidad Católica de Chile

Santiago, Chile

1
Lillian Acuña

INVESTIGADOR POST-DOCTORAL

LABORATORIO DE ECOFISIOLOGÍA MICROBIANA

FUNDACIÓN CIENCIA & VIDA

SANTIAGO, Chile

1
Claudia Lefimil

Profesor Asistente

Instituto de Investigación en Ciencias odontológicas

UNIVERSIDAD DE CHILE

Santiago, Chile

1
Luis León

Director of Bioinformatics

R&D

uBiome

Santiago, Chile

1
Renato Chávez

Associate Professor

Biology

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

1
Mauricio Acosta

Investigador

Universidad Católica del Norte

Antofagasta, Chile