Transcriptome analysis of the couch potato (CPO) protein reveals an expression pattern associated with early development in the salmon louse Caligus rogercresseyi

Gallardo-Escarate, C; Valenzuela-Munoz, V; Nunez-Acuna, G; Chavez-Mardones, J; Maldonado-Aguayo, W

Abstract

The couch potato (CPO) protein is a key biomolecule involved in regulating diapause through the RNA-binding process of the peripheral and central nervous systems in insects and also recently discovered in a few crustacean species. As such, ectoparasitic copepods are interesting model species that have no evidence of developmental arrest. The present study is the first to report on the cloning of a putative CPO gene from the salmon louse Caligus rogercresseyi (CrCPO), as identified by high-throughput transcriptome sequencing. In addition, the transcription expression in larvae and adults was evaluated using quantitative real-time PCR. The CrCPO cDNA sequence showed 3261 base pairs (bp), consisting of 713 bp of 5' UTR, 1741 bp of 3' UTR, and an open reading frame of 807 bp encoding for 268 amino acids. The highly conserved RNA binding regions RNP2 (LFVSGL) and RNP1 (SPVGFVTF), as well the dimerization site CLEF), were also found. Furthermore, eight single nucleotide polymorphisms located in the untranslated regions and one located in the coding region were detected. Gene transcription analysis revealed that CrCPO has ubiquitous expression across larval stages and in adult individuals, with the highest expression from nauplius to copepodid stages. The present study suggests a putative biological function of CrCPO associated with the development of the nervous system in salmon lice and contributes molecular evidence for candidate genes related to host-parasite interactions. (C) 2013 Elsevier B.V. All rights reserved.

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Título según WOS: Transcriptome analysis of the couch potato (CPO) protein reveals an expression pattern associated with early development in the salmon louse Caligus rogercresseyi
Título de la Revista: GENE
Volumen: 536
Número: 1
Editorial: ELSEVIER SCIENCE BV
Fecha de publicación: 2014
Página de inicio: 1
Página final: 8
Idioma: English
URL: http://linkinghub.elsevier.com/retrieve/pii/S0378111913016429
DOI:

10.1016/j.gene.2013.11.100

Notas: ISI